PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g026130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 195aa    MW: 21932 Da    PI: 10.7535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g026130.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.37.1e-076688123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F+r  nL+ H r H
  Csa04g026130.1 66 FICEICNKGFKRDQNLQLHRRGH 88
                    89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-56489No hitNo description
Gene3DG3DSA:3.30.160.601.7E-66588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8666688IPR007087Zinc finger, C2H2
PfamPF121715.5E-66688IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MIIIINSHFP AMSFTKNTSP QILTLTLILP PQTQPRGSEI YREIQAYPDA EVIALSPNSL  60
MATNRFICEI CNKGFKRDQN LQLHRRGHNL PWKLKQRTNK DQIKKKAAQM GSKRSSSSLN  120
NSKAFGLMRN TSIFNNKQTE NMKTTEVDEG GFTRDFLGVG SQHRTWPLLM VNRNLLDSSP  180
PATTDGTPTS DRNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4283021e-116AF428302.1 Arabidopsis thaliana AT3g45260/F18N11_20 mRNA, complete cds.
GenBankAJ6214931e-116AJ621493.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 1 (idz1 gene).
GenBankAY1439361e-116AY143936.1 Arabidopsis thaliana At3g45260/F18N11_20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425952.17e-53PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_010425953.17e-53PREDICTED: zinc finger protein JACKDAW-like
SwissprotF4JYZ81e-46IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLR0HJJ25e-38R0HJJ2_9BRAS; Uncharacterized protein
STRINGAT5G60470.13e-44(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.12e-37C2H2 family protein